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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5771075_5771411_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5771075 - 5771411
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTCAGATTACTA
Flanking Amino Acid:
WVHSKCENLSDEMYEILSNL
Intron Amino Acid Position:
1398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
74.1
0.6
1
69
38.9
Major PPT
88.8
0.87
0.7
81.3
36.4
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
43.3
-0.5
2.2
56.66
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701