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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5772399_5773107_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5772399 - 5773107
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACATATTTATCT
Flanking Amino Acid:
TKPTKKKKVWICTKCVRCKS
Intron Amino Acid Position:
1320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
74.3
40.5
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
51.8
0.14
1.8
68
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701