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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5773204_5773475_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5773204 - 5773475
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCCAA
5'SS Class:
major
3'SS Sequence:
ATTATTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTCCCATTATT
Flanking Amino Acid:
VCGRQHQATKQLLECNKCRN
Intron Amino Acid Position:
1288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
56.2
44.7
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
79.7
0.67
0.8
74.5
35.6
Minor 5ss
41.7
-0.9
3.2
56.2
48
Minor BPS
58.8
0.36
1.9
82.99
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701