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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5777774_5778556_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5777774 - 5778556
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GCTGCTTTAATT
Flanking Amino Acid:
SKAYLQKQAKAAKKKEKKSK
Intron Amino Acid Position:
1010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
87.6
0.85
0.6
85
22.5
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
67.9
0.64
1.4
75.88
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701