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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5779296_5779717_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5779296 - 5779717
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
EKILSSMGNDDKSSIAGSEE
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
71.5
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
38.6
-1.3
3.1
48.8
47.3
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701