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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5783820_5785191_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5783820 - 5785191
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCCTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATTCTCTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.9
0.49
0.8
66.3
29.1
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
49.2
0.02
1.9
69.2
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004837
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005072
5753545 - 5793245
39701