Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5810482_5810749_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5810482 - 5810749

Intron Length:

268

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCCCA

5'SS Class:

major

3'SS Sequence:

TTTTTAATTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATGTTTTTAATT

Flanking Amino Acid:

ERRSKNVHMKGLEKETCLIP

Intron Amino Acid Position:

485

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

64.2

41.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.7

0.74

0.8

75.5

38.4

Minor 5ss

44.2

-0.6

2.8

57.3

46.9

Minor BPS

73.6

0.82

1.1

81.25

Associated Gene:

Gene:

UBE4A

Ensembl Gene ID:

ENSAPLG00000014848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031026

5802920 - 5815744

12825

ENSAPLT00000015517

5802920 - 5815530

12611