Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5814624_5815983_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5814624 - 5815983

Intron Length:

1360

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCTGGACCC

5'SS Class:

weak_major

3'SS Sequence:

GCATGCTGAGAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCAGCAT

U12 Branch Point Sequence:

GCATGCTGAGAA

Flanking Amino Acid:

VPVPVPVPSLASAFYAKCSP

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.7

0.21

1.4

54.1

41.2

Major BPS

43.3

-0.4

1.5

47.7

45.7

Major PPT

-0.1

1.2

45.6

40.3

Minor 5ss

17.4

-3.8

3.5

18.9

Minor BPS

41.1

-0.6

47.42

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017742

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045704

5814553 - 5818439

3887

ENSAPLT00000019966

5814553 - 5818765

4213