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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5833111_5834089_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5833111 - 5834089
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTAT
5'SS Class:
weak_major
3'SS Sequence:
GTTTTATTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTCAGTACAT
Flanking Amino Acid:
RDGSEAGLVKAFHEEYSRLY
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.5
37.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.1
0.61
1
73.8
40.8
Minor 5ss
55.9
0.2
2.4
73.2
43.6
Minor BPS
44.5
-0.3
2.5
71.29
45

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607