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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5835584_5836515_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5835584 - 5836515
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATACCA
5'SS Class:
major
3'SS Sequence:
GTTGTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTCCTGACAG
Flanking Amino Acid:
SQDLSSESGLDQSSGCEQSV
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.2
36.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
70.6
0.46
1.1
65.3
41.2
Minor 5ss
26.9
-2.7
2.8
31.8
42
Minor BPS
50.4
-0.1
1.9
61.6
45.8

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607