Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5838660_5839400_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5838660 - 5839400

Intron Length:

741

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTGCCTGTTACT

Flanking Amino Acid:

CILDMLSQPNSILERKDTET

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

1.1

79.2

36.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

92.6

0.96

0.7

88.3

28.9

Minor 5ss

31.5

-2.1

2.4

34.9

40.7

Minor BPS

45.4

-0.2

2.3

64.79

45.9

Associated Gene:

Gene:

USP28

Ensembl Gene ID:

ENSAPLG00000015400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016123

5828996 - 5852602

23607