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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5841140_5841302_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5841140 - 5841302
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATATCTCATGT
Flanking Amino Acid:
LEFPQTIYMDRYLYCSKELI
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.6
0.6
0.9
70
41.4
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
45.5
-0.2
2
65.82
44.5

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607