Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5841431_5845658_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5841431 - 5845658

Intron Length:

4228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

GCTTTTTTTACA

Flanking Amino Acid:

ATQSVKYGQERWFTKLPPVL

Intron Amino Acid Position:

332

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

1.1

74.3

37.2

Major BPS

77.8

0.69

78.2

31.8

Major PPT

88.6

0.87

0.7

83.2

31.9

Minor 5ss

36.9

-1.5

2.6

45.1

42.8

Minor BPS

59.2

0.28

1.6

66.95

39.5

Associated Gene:

Gene:

USP28

Ensembl Gene ID:

ENSAPLG00000015400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016123

5828996 - 5852602

23607