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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_584650_586689_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
584650 - 586689
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCATCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GCTCCTCTGACT
Flanking Amino Acid:
LALGVGRDLSSYPRYLVVGD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
68.3
0.41
1
62.9
38.2
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
53
0.17
1.7
70.23
40.7

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000017930
506331 - 755761
249431
ENSAPLT00000002848
506331 - 590542
84212
ENSAPLT00000045988
506331 - 613669
107339
ENSAPLT00000045217
506331 - 755761
249431