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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5846869_5847291_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5846869 - 5847291
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TGACTCTCAACT
Flanking Amino Acid:
DAFRSAEEQQQDVSEFTHKL
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
77.7
0.62
0.8
69.7
36.7
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
61.5
0.44
1.6
75.65
40.3

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607