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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5847969_5848861_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5847969 - 5848861
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TAATTGTTACCT
Flanking Amino Acid:
NTCWFSAVIQSLFQLPEFRR
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73
34.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
87
0.83
0.7
84.5
23.4
Minor 5ss
43.2
-0.7
2.9
55.8
48.3
Minor BPS
49.7
0.06
2.3
73.36
43.4

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607