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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5849830_5850574_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5849830 - 5850574
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGATTAGAATG
Flanking Amino Acid:
GSAVGKQLPQNGAALNPNNK
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
69.9
41.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
73.9
0.54
0.8
65.2
36.3
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
44.2
-0.5
1.7
49.16
39

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607