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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5850708_5852165_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5850708 - 5852165
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
GTCTTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AACACTGGAACT
Flanking Amino Acid:
DSAFLQAALKAANGDLMEAV
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
73.6
0.53
0.8
65.9
36
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
45
-0.3
2.1
61.08
42.5

Associated Gene:

Gene:
USP28
Ensembl Gene ID:
ENSAPLG00000015400
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016123
5828996 - 5852602
23607