About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_586840_610146_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
586840 - 610146
Intron Length:
23307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TCTTTCTCGCCT
Flanking Amino Acid:
YKEKYRRMTEGQASSFTQQP
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
81.3
0.7
0.7
72.7
32.1
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
43
-0.4
3.5
74.54
42.8

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045217
506331 - 755761
249431
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000017930
506331 - 755761
249431
ENSAPLT00000045988
506331 - 613669
107339