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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5873952_5874031_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5873952 - 5874031
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
TTCTTCCCACAG
Flanking Amino Acid:
DVMVYAILSVDEKNQVLTTY
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
81.5
0.71
0.7
76.2
26
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
40.6
-0.8
2.1
48.99
44.5

Associated Gene:

Gene:
HTR3A
Ensembl Gene ID:
ENSAPLG00000002673
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002712
5873567 - 5878682
5116