About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5874077_5874938_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5874077 - 5874938
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAA
U12 Branch Point Sequence:
GAACCCACCACC
Flanking Amino Acid:
VLTTYIWYRQHWTDEFLQWD
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
65
42.7
Major BPS
56.6
0.16
1.2
49.3
38
Major PPT
84
0.77
0.8
78.1
30.7
Minor 5ss
31.8
-2.1
3
38.9
46.2
Minor BPS
40.9
-0.7
2.1
48.81
39.9

Associated Gene:

Gene:
HTR3A
Ensembl Gene ID:
ENSAPLG00000002673
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002712
5873567 - 5878682
5116