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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5889854_5925759_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5889854 - 5925759
Intron Length:
35906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
TCCTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
GATGCCTGAGGC
Flanking Amino Acid:
RLRMHLLAHSGTDMAVFCLL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
77.8
0.63
0.7
72.7
25.4
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
44.3
-0.4
2
53.38
43.8

Associated Gene:

Gene:
ZBTB16
Ensembl Gene ID:
ENSAPLG00000002963
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036522
5889235 - 5974407
85173