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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5925858_5972229_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5925858 - 5972229
Intron Length:
46372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAC
U12 Branch Point Sequence:
GAGGACTAACCC
Flanking Amino Acid:
LPDNETVEQHRKLHSGMKTY
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
59.1
0.23
1.2
61.6
34.1
Major PPT
77.3
0.61
0.8
70.5
36.3
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
40.3
-0.7
2
44.84
43.1

Associated Gene:

Gene:
ZBTB16
Ensembl Gene ID:
ENSAPLG00000002963
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019751
5889235 - 5974407
85173
ENSAPLT00000003008
5889235 - 5974407
85173
ENSAPLT00000036522
5889235 - 5974407
85173