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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5997522_5998105_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5997522 - 5998105
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAGG
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTCTCATGAAAT
Flanking Amino Acid:
GRPIKIQFRSGSSHASQDGN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
54.7
49.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
87.6
0.85
0.7
85.4
29.3
Minor 5ss
43.3
-0.7
3
58
46.3
Minor BPS
52.8
0.17
1.9
72.71
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005180
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005353
5996965 - 5999744
2780