Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5998203_5998694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5998203 - 5998694

Intron Length:

492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGTC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

AAACTCCTAATC

Flanking Amino Acid:

PSGTAHPASSRYDKSPDNAV

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.99

0.8

82.4

28.6

Major BPS

81.9

0.79

0.9

80.1

Major PPT

88.5

0.87

0.6

Minor 5ss

-1.7

3.5

49.9

46.6

Minor BPS

49.3

-0

1.6

57.16

34.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005180

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005353

5996965 - 5999744

2780