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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5998789_5999240_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5998789 - 5999240
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
ATTGAATCCACC
Flanking Amino Acid:
SPDNLQRQGVMHGAMRQQSQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
40
-0.8
2.3
55.37
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005180
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005353
5996965 - 5999744
2780