About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6003373_6004131_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6003373 - 6004131
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATGTCTTTGAAG
Flanking Amino Acid:
QTPPGLCPLAGNSVHADKKF
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
78.9
0.65
0.9
73.7
36.9
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
59.2
0.14
1.5
61.48
40.7

Associated Gene:

Gene:
REXO2
Ensembl Gene ID:
ENSAPLG00000005045
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005222
6000620 - 6006571
5952