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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6004241_6004603_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6004241 - 6004603
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTGCTTACAG
Flanking Amino Acid:
IDVSTVKELCRRWYPEEYEF
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
0.8
75.8
32.9
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
45.8
-0.4
2.2
51.73
48.5

Associated Gene:

Gene:
REXO2
Ensembl Gene ID:
ENSAPLG00000005045
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005222
6000620 - 6006571
5952