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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6004658_6006132_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6004658 - 6006132
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CCCTCCTTAATT
Flanking Amino Acid:
EFAPKKAASHRALDDIRESI
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.7
0.71
0.8
78.2
35.3
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
75.8
0.89
1.3
79.08
43.9

Associated Gene:

Gene:
REXO2
Ensembl Gene ID:
ENSAPLG00000005045
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005222
6000620 - 6006571
5952