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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6050960_6051310_F

Intron Information:

Intron Rank:
131432
Intron Class:
major
Intron Phase:
Intron Coordinates:
6050960 - 6051310
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATACCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.1
0.79
0.8
79.3
32.3
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
51.5
0.12
1.7
69.75
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020591
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046263
6050522 - 6052342
1821