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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6080258_6083041_R

Intron Information:

Intron Rank:
149564
Intron Class:
major
Intron Phase:
Intron Coordinates:
6080258 - 6083041
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGGATTAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.1
0.36
1.1
59.6
45.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
75.1
0.87
1.5
91.36
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027997
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040582
6078994 - 6106163
27170