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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6081354_6081466_F

Intron Information:

Intron Rank:
150231
Intron Class:
major
Intron Phase:
Intron Coordinates:
6081354 - 6081466
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCAGGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTCCCTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.2
51.2
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.6
0.91
0.6
89.1
20
Minor 5ss
29.5
-2.4
3.5
41.3
45.4
Minor BPS
64.3
0.43
1.7
74.28
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030744
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039820
6080935 - 6082109
1175