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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6097796_6105321_R

Intron Information:

Intron Rank:
149561
Intron Class:
major
Intron Phase:
Intron Coordinates:
6097796 - 6105321
Intron Length:
7526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATATCTGTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
84.5
0.78
0.7
79.8
32.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
52
0.04
2.1
66.84
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027997
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025154
6097065 - 6106163
9099