About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_610225_755754_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
610225 - 755754

Intron Length:
145530

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGAAGAA

5'SS Class:
major

3'SS Sequence:
TCTTCTCTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTCTAAC

U12 Branch Point Sequence:
AGCCTTCTAACA

Flanking Amino Acid:
MKELGLPGRGCC

Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72
0.52
1.1
64.6
35.4

Major BPS
84.6
0.86
0.8
83.9
22.3

Major PPT
89.3
0.88
0.6
84.5
23.3

Minor 5ss
27.7
-2.6
3.6
37.3
47.4

Minor BPS
48.3
-0.1
1.6
56.18
36.6

Associated Gene:

Gene:
KIRREL3

Ensembl Gene ID:

Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

506331 - 755761
249431

506331 - 755834
249504

506331 - 755761
249431