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Intron Name: Anas_platyrhynchos_platyrhynchos_25_6118625_6119619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6118625 - 6119619

Intron Length:

995

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCAA

5'SS Class:

strong_major

3'SS Sequence:

GCTTCGCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

TGTCACAGACCT

Flanking Amino Acid:

ILGRYFARHKGTYFTHEAKG

Intron Amino Acid Position:

366

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.92

0.9

74.9

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

77.5

0.62

0.9

73.1

37.3

Minor 5ss

30.1

-2.3

3.2

37.9

46.9

Minor BPS

43.1

-0.4

2.1

65.85

43.6

Associated Gene:

Gene:

CADM1

Ensembl Gene ID:

ENSAPLG00000004955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030547

6118506 - 6262502

143997

ENSAPLT00000037033

6117727 - 6262502

144776

ENSAPLT00000005135

6118506 - 6263765

145260

ENSAPLT00000036653

6117506 - 6296444

178939

ENSAPLT00000034751

6118506 - 6244313

125808

ENSAPLT00000034490

6118506 - 6280217

161712

ENSAPLT00000039866

6118506 - 6296444

177939