Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6128117_6130252_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6128117 - 6130252

Intron Length:

2136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

GTTTGCTCAGTG

Flanking Amino Acid:

AEELDYGDLSGTRVLLNAST

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.6

32.5

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

79.6

0.67

0.9

76.7

37.4

Minor 5ss

31.9

-2.1

3.6

47.6

Minor BPS

45.8

-0.4

2.2

56.4

45.2

Associated Gene:

Gene:

CADM1

Ensembl Gene ID:

ENSAPLG00000004955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037033

6117727 - 6262502

144776

ENSAPLT00000034751

6118506 - 6244313

125808

ENSAPLT00000039866

6118506 - 6296444

177939