Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6136669_6151971_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6136669 - 6151971

Intron Length:

15303

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

TTCCCGTGTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCAAT

U12 Branch Point Sequence:

CTTCCTCCAATC

Flanking Amino Acid:

SHADYMLFVYDTTATTEPAV

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

63.8

42.6

Major BPS

59.5

0.24

1.3

68.4

35.9

Major PPT

69.5

0.44

0.9

64.9

36.3

Minor 5ss

31.4

-2.1

3.3

40.1

45.9

Minor BPS

47.4

-0.2

1.8

60.61

Associated Gene:

Gene:

CADM1

Ensembl Gene ID:

ENSAPLG00000004955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030547

6118506 - 6262502

143997

ENSAPLT00000005135

6118506 - 6263765

145260

ENSAPLT00000037033

6117727 - 6262502

144776

ENSAPLT00000034751

6118506 - 6244313

125808

ENSAPLT00000034490

6118506 - 6280217

161712