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Intron Name: Anas_platyrhynchos_platyrhynchos_25_6152145_6155198_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6152145 - 6155198

Intron Length:

3054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTTGG

5'SS Class:

major

3'SS Sequence:

CCCTCCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

AGTAATGTGACT

Flanking Amino Acid:

ELTCAAFGKPQPTDMRWLRV

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

1.1

63.8

43.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

74.3

0.55

0.7

68.9

24.8

Minor 5ss

41.8

-0.9

2.8

54.9

43.3

Minor BPS

44.4

-0.3

2.1

63.75

40.4

Associated Gene:

Gene:

CADM1

Ensembl Gene ID:

ENSAPLG00000004955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030547

6118506 - 6262502

143997

ENSAPLT00000037033

6117727 - 6262502

144776

ENSAPLT00000005135

6118506 - 6263765

145260

ENSAPLT00000036653

6117506 - 6296444

178939

ENSAPLT00000034751

6118506 - 6244313

125808

ENSAPLT00000034490

6118506 - 6280217

161712