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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6172288_6173391_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6172288 - 6173391
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATCACA
Flanking Amino Acid:
RQTIYFRDFRPLKDSRFQLV
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
82.3
32.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.2
0.75
0.8
77.2
31.6
Minor 5ss
46.1
-0.4
2.7
60.9
37.1
Minor BPS
49.7
-0
2.1
71.45
40.9

Associated Gene:

Gene:
CADM1
Ensembl Gene ID:
ENSAPLG00000004955
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034490
6118506 - 6280217
161712
ENSAPLT00000039866
6118506 - 6296444
177939
ENSAPLT00000030547
6118506 - 6262502
143997
ENSAPLT00000037033
6117727 - 6262502
144776
ENSAPLT00000005135
6118506 - 6263765
145260
ENSAPLT00000036653
6117506 - 6296444
178939
ENSAPLT00000034751
6118506 - 6244313
125808