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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6173539_6263755_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6173539 - 6263755
Intron Length:
90217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATCA
Flanking Amino Acid:
MVPGDGQNLVTED
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82.2
0.73
0.9
87.5
23.3
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
58
0.25
1.9
74.45
36.9

Associated Gene:

Gene:
CADM1
Ensembl Gene ID:
ENSAPLG00000004955
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005135
6118506 - 6263765
145260