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Intron Name: Anas_platyrhynchos_platyrhynchos_25_6173539_6296302_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6173539 - 6296302

Intron Length:

122764

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTCTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATTTTCATATCA

Flanking Amino Acid:

VLAVCCVIPAGDGQNLVTED

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

35.3

Major BPS

100

1.24

0.5

100

Major PPT

82.2

0.73

0.9

87.5

23.3

Minor 5ss

28.4

-2.5

2.9

33.4

41.6

Minor BPS

0.25

1.9

74.45

36.9

Associated Gene:

Gene:

CADM1

Ensembl Gene ID:

ENSAPLG00000004955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039866

6118506 - 6296444

177939

ENSAPLT00000036653

6117506 - 6296444

178939