Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6401368_6409866_R

Intron Information:

Intron Rank:

145710

Intron Class:

major

Intron Phase:

Intron Coordinates:

6401368 - 6409866

Intron Length:

8499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

TTTATTTTATAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

36.6

Major BPS

70.4

0.51

67.1

39.4

Major PPT

84.8

0.78

0.7

80.1

31.6

Minor 5ss

-2.2

3.2

41.8

Minor BPS

49.8

-0.1

1.8

60.67

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030463

6398709 - 6410098

11390