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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6466200_6467774_R

Intron Information:

Intron Rank:
154241
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6466200 - 6467774
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACATACT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.1
63.6
40.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.7
0.8
0.7
81.5
23.5
Minor 5ss
39.2
-1.2
3.2
57.5
41.2
Minor BPS
73.3
0.59
1.4
73.99
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030445
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018472
6465852 - 6468229
2378