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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6682753_6683356_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6682753 - 6683356
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TCTCTCGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
AGCTCCTCACTG
Flanking Amino Acid:
QQPQAKVIVLGLLPRGEKPN
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.5
0.64
0.8
76.3
32.3
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
47.3
-0.3
1.9
50.57
43.9

Associated Gene:

Gene:
PAFAH1B2
Ensembl Gene ID:
ENSAPLG00000019483
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020352
6681551 - 6685029
3479