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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6688983_6689088_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6688983 - 6689088
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CTGCCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAC
U12 Branch Point Sequence:
TGGCACGGCACG
Flanking Amino Acid:
SFQVPLILRGLYQRKYAYQE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
43
-0.4
1.5
48.8
46.3
Major PPT
66.4
0.37
0.9
57.3
38.6
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
34.4
-1.3
2.3
39.53
43.4

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016299
6688111 - 6694466
6356
ENSAPLT00000046219
6688111 - 6694519
6409
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409