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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6689251_6689342_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6689251 - 6689342
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CCGCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CGGCCCTCATCC
Flanking Amino Acid:
RVTRVENFVLRTNEAFTFNA
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
69.8
0.45
0.8
61
35.1
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
46.6
-0.2
1.8
52.95
44.2

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016299
6688111 - 6694466
6356
ENSAPLT00000046219
6688111 - 6694519
6409
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409