Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6689570_6689637_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6689570 - 6689637

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTTTG

5'SS Class:

major

3'SS Sequence:

TCGCACCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCGCAC

U12 Branch Point Sequence:

CTCCTCGCACCC

Flanking Amino Acid:

CSVISIQDILCPVYDLDNNV

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

71.5

41.1

Major BPS

49.1

-0

1.3

60.7

37.6

Major PPT

65.6

0.35

0.9

58.2

32.7

Minor 5ss

42.6

-0.8

3.1

54.1

44.6

Minor BPS

38.3

-0.9

2.2

46.76

42.8

Associated Gene:

Gene:

SIDT2

Ensembl Gene ID:

ENSAPLG00000015640

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041877

6688111 - 6694519

6409

ENSAPLT00000021407

6688111 - 6694519

6409

ENSAPLT00000016299

6688111 - 6694466

6356

ENSAPLT00000046219

6688111 - 6694519

6409