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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6690344_6690462_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6690344 - 6690462
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CTCCCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GTGCCGCTCACA
Flanking Amino Acid:
TLLIACWESCRQQKRKGLLA
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
57.1
42.2
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
74.7
0.56
0.9
71.7
32.7
Minor 5ss
34.2
-1.8
3
44.2
43.2
Minor BPS
40.2
-0.7
2.5
54.23
44

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046219
6688111 - 6694519
6409
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409
ENSAPLT00000016299
6688111 - 6694466
6356