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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6690981_6691063_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6690981 - 6691063
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GCATGCCCACCC
Flanking Amino Acid:
PYDTYGYGSFENGSSGSTEA
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
37.3
-0.9
2.2
44.87
42.9

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409
ENSAPLT00000016299
6688111 - 6694466
6356
ENSAPLT00000046219
6688111 - 6694519
6409