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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6691139_6691699_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6691139 - 6691699
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GGCTCTGGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCATCAC
U12 Branch Point Sequence:
GCCCCCATCACC
Flanking Amino Acid:
GSAEVSYGYVGERSLENVAG
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
53.4
0.09
1.1
57.3
37.7
Major PPT
59.3
0.21
1.1
52.9
41.5
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
45.9
-0.3
2
53.53
43.9

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409
ENSAPLT00000016299
6688111 - 6694466
6356
ENSAPLT00000046219
6688111 - 6694519
6409